Hands-On Workshop on Cryo-EM Guided Modeling and Simulation
Instructor
Till Rudack (Ruhr University Bochum)
Teaching Assistant
Maximilian Scheurer (Heidelberg University)
Technical Support
Florian Beck (MPI for Biochemistry)
Schedule
06/22/2017 Day 1 Molecular Dynamics Simulations
09:00-10:30 Introduction to Molecular Visualization and Dynamics with VMD and NAMD (Till Rudack)
10:30-10:50 Coffee Break
10:50-11:30 Introduction to QwikMD: Gateway to Easy Simulations (Till Rudack)
11:30-12:00 Introduction to PyContact: Visual Analysis of Protein Contacts (Maximilian Scheurer)
12:00-13:00 Lunch Break
13:00-17:00 Tutorials (QwikMD, VMD, MDFF)
06/23/2017 Day 2 Integrative Modeling
09:00-10:30 Integrative Modeling: Applications from Modern Research I (Till Rudack)
10:30-10:50 Coffee Break
10:50-12:00 Integrative Modeling: Applications from Modern Research II (Till Rudack)
12:00-13:00 Lunch Break
13:00-17:00 Tutorials (MDFF, ModelMaker)
All Tutorials are provided by the NIH Center for Macromolecular Modeling and Bioinformatics and can be downloaded here:
VMD and NAMD for all common operating systems are available free of charge here: