PeakQuant (a Proteomics software suite)

Peakquant Logo 88x89

PeakQuant (formerly known as Peakardt) serves as an integrated platform for several Proteomics tools and provides an easily operated graphical user interface.

At the moment the PeakQuant software suite is publicly available and free for non-commercial use.

To use PeakQuant as local installed version, download the following file, unzip to an arbitrary folder like "C:\PeakQuant\" and double-click PeakQuant.jar or PeakQuant.bat:

download (local jar after unzip, version 1.5.47)

If you use PeakQuant to publish results, please cite the following reference:
"Eisenacher M, Kohl M, Wiese S, Hebeler R, Meyer HE, Warscheid B, Stephan C (2012) Find Pairs: The Module for Protein Quantification of the PeakQuant Software Suite. OMICS: A Journal of Integrative Biology 2012 Sep;16(9):457-67." [PubMed ID: 22909347]

14N / 15N test data set (mzXML converted excerpt of spectra set used in Hebeler et al. (2008) - spot 58, experiment 1, glutathione S-transferase) and suitable configuration files:


If you have any questions or improvement suggestions,
please contact: mailto:martin.eisenacher{@}ruhr-uni-bochum{.}de