Skip navigation links
A B C D E F G I L M N P R S T U W 

R

ReadIniSectionException - Exception in de.mpc.prolic.exceptions
Exception, which is thrown if problems occur while accessing the ProLiC configuration file
ReadIniSectionException() - Constructor for exception de.mpc.prolic.exceptions.ReadIniSectionException
Empty Constructor
ReadIniSectionException(String) - Constructor for exception de.mpc.prolic.exceptions.ReadIniSectionException
 
ReadIniSectionException(Throwable) - Constructor for exception de.mpc.prolic.exceptions.ReadIniSectionException
 
ReadIniSectionException(String, Throwable) - Constructor for exception de.mpc.prolic.exceptions.ReadIniSectionException
 
ReadIniSectionException(String, Throwable, boolean, boolean) - Constructor for exception de.mpc.prolic.exceptions.ReadIniSectionException
 
readProLiCformatedProteinFile(File, String, String, boolean, boolean, Logger, Boolean) - Static method in class de.mpc.prolic.misc.IO
Reads protein data (including the related peptide information) from a file in the ProLiC format and builds the protein instances.
readSectionFromIni(String, String, Boolean, String, boolean) - Static method in class de.mpc.prolic.misc.IO
Reading the settings for ProLiC from a specific section of the configuration file.
removeModifications(String, String) - Static method in class de.mpc.prolic.misc.Tools
Removes the modification information from a given sequence with respect to the applied notation of modifications.
removeModificationsFromPeptideSet(ArrayList<Peptide>, String) - Static method in class de.mpc.prolic.misc.Tools
Removes the modification information from all peptides in a given peptide set.
removePTMs(String, String) - Static method in class de.mpc.prolic.misc.Tools
Removes the modification information from a given sequence.
A B C D E F G I L M N P R S T U W 
Skip navigation links